Let me explain it by game.
LoZ: Like Troll clowns stated, Gannon didn't meet Link until the end of the game, so he didn't know what he was up against.
aLttP: Due to some timeline shenanigans, Ganon managed to split the timeline by defeating the Hero of Time, so he has a reason to underestimate Link.
OoT: He first meets Link in this game.
OoS+OoA: When Ganon was resurected, he was just a mindless, raging body.
WW: As Troll clowns stated, he thought he had the upper hand by killing the sages to drain the master sword.
TP: He didn't know what he was up against.
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